2ARR Hydrolase Inhibitor Peptide date Aug 21, 2005
title Human Plasminogen Activator Inhibitor-2.[Loop (66-98) Deleti Complexed With Peptide N-Acetyl-Teaaagmggvmtgr-Oh
authors D.A.Di Giusto, A.P.Sutherland, L.Jankova, S.J.Harrop, P.M.Curmi,
compound source
Molecule: Plasminogen Activator Inhibitor-2
Chain: A
Synonym: Pai-2, Placental Plasminogen Activator Inhibitor, Arg-Serpin, Urokinase Inhibitor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 14-Mer From Plasminogen Activator Inhibitor-2
Chain: P
Synonym: Pai-2, Placental Plasminogen Activator Inhibitor, Arg-Serpin, Urokinase Inhibitor;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.186 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.952 103.802 41.406 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand ACE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePlasminogen activator inhibitor-2 is highly tolerant to P8 residue substitution--implications for serpin mechanistic model and prediction of nsSNP activities., Di Giusto DA, Sutherland AP, Jankova L, Harrop SJ, Curmi PM, King GC, J Mol Biol. 2005 Nov 11;353(5):1069-80. Epub 2005 Sep 22. PMID:16214170
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (2arr.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 2ARR
  • CSU: Contacts of Structural Units for 2ARR
  • Likely Quarternary Molecular Structure file(s) for 2ARR
  • Structure Factors (407 Kb)
  • Retrieve 2ARR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ARR from S2C, [Save to disk]
  • Re-refined 2arr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ARR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ARR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ARR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2arr] [2arr_A] [2arr_P]
  • SWISS-PROT database: [P05120]
  • Domain organization of [PAI2_HUMAN] by SWISSPFAM
  • Domain found in 2ARR: [SERPIN ] by SMART
  • Other resources with information on 2ARR
  • Community annotation for 2ARR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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