2AX1 Transferase date Sep 02, 2005
title Hepatitis C Virus Ns5b Rna Polymerase In Complex With A Cova Inhibitor (5ee)
authors J.P.Powers, D.E.Piper, Y.Li, V.Mayorga, J.Anzola, J.M.Chen, J.C.Ja J.Liu, M.G.Peterson, G.R.Tonn, Q.Ye, N.P.Walker, Z.Wang
compound source
Molecule: Genome Polyprotein
Chain: A, B
Fragment: Ns5b Rna-Directed Rna Polymerase
Ec: 2.7.7.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Hepatitis C Virus
Organism_taxid: 11103
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.009 86.770 162.739 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 5EE, SO4 enzyme Transferase E.C.2.7.7.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSAR and Mode of Action of Novel Non-Nucleoside Inhibitors of Hepatitis C NS5b RNA Polymerase., Powers JP, Piper DE, Li Y, Mayorga V, Anzola J, Chen JM, Jaen JC, Lee G, Liu J, Peterson MG, Tonn GR, Ye Q, Walker NP, Wang Z, J Med Chem. 2006 Feb 9;49(3):1034-46. PMID:16451069
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (2ax1.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (2ax1.pdb2.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 2AX1
  • CSU: Contacts of Structural Units for 2AX1
  • Likely Quarternary Molecular Structure file(s) for 2AX1
  • Structure Factors (538 Kb)
  • Retrieve 2AX1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AX1 from S2C, [Save to disk]
  • Re-refined 2ax1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AX1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AX1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AX1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ax1_B] [2ax1_A] [2ax1]
  • SWISS-PROT database: [P26663]
  • Domain organization of [POLG_HCVBK] by SWISSPFAM
  • Other resources with information on 2AX1
  • Community annotation for 2AX1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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