2AYL Oxidoreductase date Sep 07, 2005
title 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin I Reconstituted Ovine Prostaglandin H2 Synthase-1 Complexed W Flurbiprofen
authors K.Gupta, B.S.Selinsky, P.J.Loll
compound source
Molecule: Prostaglandin Gh Synthase 1
Chain: A, B
Synonym: Cyclooxygenase-1, Cox-1, Prostaglandin-Endoperoxid 1, Prostaglandin H2 Synthase 1, Pgh Synthase 1, Pghs-1, Phs
Ec: 1.14.99.1
Organism_scientific: Ovis Aries
Organism_common: Sheep
Organism_taxid: 9940
Organ: Seminal Vesicle
symmetry Space Group: I 2 2 2
R_factor 0.218 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.931 206.550 221.553 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BOG, FLP, GOL, MAN, MNH, NAG BindingDB enzyme Oxidoreductase E.C.1.14.99.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peroxidase activity


  • Primary reference2.0 angstroms structure of prostaglandin H2 synthase-1 reconstituted with a manganese porphyrin cofactor., Gupta K, Selinsky BS, Loll PJ, Acta Crystallogr D Biol Crystallogr. 2006 Feb;62(Pt 2):151-6. Epub 2006, Jan 18. PMID:16421446
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (2ayl.pdb1.gz) 207 Kb
  • LPC: Ligand-Protein Contacts for 2AYL
  • CSU: Contacts of Structural Units for 2AYL
  • Likely Quarternary Molecular Structure file(s) for 2AYL
  • Structure Factors (1542 Kb)
  • Retrieve 2AYL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AYL from S2C, [Save to disk]
  • Re-refined 2ayl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AYL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AYL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AYL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ayl_B] [2ayl_A] [2ayl]
  • SWISS-PROT database: [P05979]
  • Domain organization of [PGH1_SHEEP] by SWISSPFAM
  • Domain found in 2AYL: [EGF ] by SMART
  • Other resources with information on 2AYL
  • Community annotation for 2AYL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science