2AYO	Hydrolase	date	Sep 07, 2005
title	Structure Of Usp14 Bound To Ubquitin Aldehyde
authors	M.Hu, P.Li, P.D.Jeffrey, Y.Shi
compound		source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 14 Chain: A Synonym: Ubiquitin Thiolesterase 14, Ubiquitin-Specific Pro Protease 14, Deubiquitinating Enzyme 14; Ec: 3.1.2.15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Usp14, Tgt Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-2t
Molecule: Ubiquitin Chain: B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-2t
symmetry	Space Group: P 31 2 1	R_factor 0.290 R_Free 0.330
crystal cell	length a length b length c angle alpha angle beta angle gamma 183.931 183.931 45.710 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.50 Å
ligand	GLZ	enzyme	Hydrolase E.C.3.1.2.15 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure and mechanisms of the proteasome-associated deubiquitinating enzyme USP14., Hu M, Li P, Song L, Jeffrey PD, Chenova TA, Wilkinson KD, Cohen RE, Shi Y, EMBO J 2005 Nov 2;24(21):3747-56. Epub 2005 Oct 6. PMID:16211010

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (2ayo.pdb1.gz) 69 Kb Biological Unit Coordinates (2ayo.pdb2.gz) 135 Kb LPC: Ligand-Protein Contacts for 2AYO CSU: Contacts of Structural Units for 2AYO Likely Quarternary Molecular Structure file(s) for 2AYO Retrieve 2AYO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2AYO from S2C, [Save to disk]

View 2AYO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2AYO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2AYO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ayo_A] [2ayo] [2ayo_B] SWISS-PROT database: [P62988] [P54578] Domain organization of [UBIQ_HUMAN] [UBP14_HUMAN] by SWISSPFAM Domain found in 2AYO: [UBQ ] by SMART

Other resources with information on 2AYO

Community annotation for 2AYO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---