2AYR Transcription date Sep 07, 2005
title A Serm Designed For The Treatment Of Uterine Leiomyoma With Tissue Specificity For Uterus And Ovaries In Rats
authors C.W.Hummel, A.G.Geiser, H.U.Bryant, I.R.Cohen, R.D.Dally, K.C.Fon S.A.Frank, R.Hinklin, S.A.Jones, G.Lewis, D.J.Mccann, T.A.Shephe H.Tian, D.G.Rudman, O.B.Wallace, Y.Wang, J.A.Dodge
compound source
Molecule: Estrogen Receptor
Chain: A
Fragment: Ligand Binding Domain, Residues 304-551
Synonym: Er, Estradiol Receptor, Er-Alpha
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esr1, Esr, Nr3a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.229 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.868 58.868 276.006 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand L4G BindingDB enzyme
Primary referenceA selective estrogen receptor modulator designed for the treatment of uterine leiomyoma with unique tissue specificity for uterus and ovaries in rats., Hummel CW, Geiser AG, Bryant HU, Cohen IR, Dally RD, Fong KC, Frank SA, Hinklin R, Jones SA, Lewis G, McCann DJ, Rudmann DG, Shepherd TA, Tian H, Wallace OB, Wang M, Wang Y, Dodge JA, J Med Chem 2005 Nov 3;48(22):6772-5. PMID:16250633
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2ayr.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 2AYR
  • CSU: Contacts of Structural Units for 2AYR
  • Likely Quarternary Molecular Structure file(s) for 2AYR
  • Structure Factors (197 Kb)
  • Retrieve 2AYR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AYR from S2C, [Save to disk]
  • Re-refined 2ayr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2AYR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2AYR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AYR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ayr] [2ayr_A]
  • SWISS-PROT database: [P03372]
  • Domain organization of [ESR1_HUMAN] by SWISSPFAM
  • Domain found in 2AYR: [HOLI ] by SMART
    • Other resources with information on 2AYR
  • Community annotation for 2AYR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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