2B0O Metal Binding Protein date Sep 14, 2005
title Crystal Structure Of Uplc1 Gap Domain
authors S.Ismail, L.Shen, C.Arrowsmith, A.Edwards, M.Sundstrom, J.Weigelt A.Bochkarev, H.Park, Structural Genomics Consortium (Sgc)
compound source
Molecule: Uplc1
Chain: E, F, G, H
Fragment: Gap Domain (Residues 414-697)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ddefl1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.183 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.055 106.716 100.365 90.00 98.97 90.00
method X-Ray Diffractionresolution 2.06 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
H, F, G, E


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (2b0o.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (2b0o.pdb2.gz) 83 Kb
  • Biological Unit Coordinates (2b0o.pdb3.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 2B0O
  • CSU: Contacts of Structural Units for 2B0O
  • Likely Quarternary Molecular Structure file(s) for 2B0O
  • Structure Factors (527 Kb)
  • Retrieve 2B0O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B0O from S2C, [Save to disk]
  • Re-refined 2b0o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2B0O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B0O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B0O, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b0o_E] [2b0o] [2b0o_G] [2b0o_H] [2b0o_F]
  • SWISS-PROT database: [Q8TDY4]
  • Domain organization of [ASAP3_HUMAN] by SWISSPFAM
  • Domains found in 2B0O: [ANK] [ArfGap ] by SMART
  • Other resources with information on 2B0O
  • Community annotation for 2B0O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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