2B1I Transferase, Hydrolase date Sep 15, 2005
title Crystal Structures Of Transition State Analogue Inhibitors O Monophosphate Cyclohydrolase
authors L.Xu, Y.Chong, I.Hwang, A.D'Onofrio, K.Amore, G.P.Beardsley, C.Li, A.J.Olson, D.L.Boger, I.A.Wilson
compound source
Molecule: Bifunctional Purine Biosynthesis Protein Purh
Chain: A, B
Ec: 3.5.4.10, 2.1.2.3
Engineered: Yes
Other_details: Includes: Phosphoribosylaminoimidazolecarbox Formyltransferase (Aicar Transformylase), Imp Cyclohydrolas (Inosinicase, Imp Synthetase, Atic)
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Atic, Purh
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.198 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.000 106.500 101.000 90.00 91.50 90.00
method X-Ray Diffractionresolution 2.02 Å
ligand 93A, K enzyme Hydrolase E.C.3.5.4.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-based Design, Synthesis, Evaluation, and Crystal Structures of Transition State Analogue Inhibitors of Inosine Monophosphate Cyclohydrolase., Xu L, Chong Y, Hwang I, D'Onofrio A, Amore K, Beardsley GP, Li C, Olson AJ, Boger DL, Wilson IA, J Biol Chem. 2007 Apr 27;282(17):13033-46. Epub 2007 Feb 26. PMID:17324932
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (382 Kb) [Save to disk]
  • Biological Unit Coordinates (2b1i.pdb1.gz) 375 Kb
  • LPC: Ligand-Protein Contacts for 2B1I
  • CSU: Contacts of Structural Units for 2B1I
  • Likely Quarternary Molecular Structure file(s) for 2B1I
  • Structure Factors (1127 Kb)
  • Retrieve 2B1I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B1I from S2C, [Save to disk]
  • Re-refined 2b1i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2B1I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B1I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B1I, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b1i] [2b1i_B] [2b1i_A]
  • SWISS-PROT database: [P31335]
  • Domain organization of [PUR9_CHICK] by SWISSPFAM
  • Domains found in 2B1I: [AICARFT_IMPCHas] [MGS ] by SMART
  • Other resources with information on 2B1I
  • Community annotation for 2B1I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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