3K67 Structural Genomics, Unknown Function date Oct 08, 2009
title Crystal Structure Of Protein Af1124 From Archaeoglobus Fulgi
authors C.Chang, T.Skarina, A.Savchenko, A.Edwards, A.Joachimiak, Midwest For Structural Genomics (Mcsg)
compound source
Molecule: Putative Dehydratase Af1124
Chain: A, B
Engineered: Yes
Organism_scientific: Archaeoglobus Fulgidus
Organism_taxid: 2234
Gene: Af_1124
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.146 R_Free 0.166
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.973 55.320 69.121 90.00 93.36 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand PO4 enzyme
note 3K67 is a representative structure and supersedes 2B3N
Gene AF
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (3k67.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 3K67
  • CSU: Contacts of Structural Units for 3K67
  • Structure Factors (788 Kb)
  • Retrieve 3K67 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K67 from S2C, [Save to disk]
  • Re-refined 3k67 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K67 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K67
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K67, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k67_B] [3k67] [3k67_A]
  • SWISS-PROT database: [O29141]
  • Domain organization of [O29141_ARCFU] by SWISSPFAM
  • Other resources with information on 3K67
  • Community annotation for 3K67 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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