2B3O Hydrolase date Sep 20, 2005
title Crystal Structure Of Human Tyrosine Phosphatase Shp-1
authors J.Yang, L.Liu, D.He, X.Song, X.Liang, Z.J.Zhao, G.W.Zhou
compound source
Molecule: Tyrosine-Protein Phosphatase, Non-Receptor Type 6
Chain: A
Fragment: Shp-1
Synonym: Protein-Tyrosine Phosphatase 1c, Ptp-1c, Hematopoi Protein-Tyrosine Phosphatase, Sh-Ptp1, Protein-Tyrosine Pho Shp-1;
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpn6, Hcp, Ptp1c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.233 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.736 100.404 149.475 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of human protein-tyrosine phosphatase SHP-1., Yang J, Liu L, He D, Song X, Liang X, Zhao ZJ, Zhou GW, J Biol Chem 2003 Feb 21;278(8):6516-20. PMID:12482860
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (2b3o.pdb1.gz) 81 Kb
  • CSU: Contacts of Structural Units for 2B3O
  • Likely Quarternary Molecular Structure file(s) for 2B3O
  • Retrieve 2B3O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B3O from S2C, [Save to disk]
  • View 2B3O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B3O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B3O, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b3o] [2b3o_A]
  • SWISS-PROT database: [P29350]
  • Domain organization of [PTN6_HUMAN] by SWISSPFAM
  • Domains found in 2B3O: [PTPc] [SH2 ] by SMART
  • Other resources with information on 2B3O
  • Community annotation for 2B3O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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