OCA Atlas for 2B5B

2B5B

Antibiotic

date

Sep 28, 2005

title

A Reptilian Defensin With Anti-Bacterial And Anti-Viral Acti

authors

S.Chattopadhyay, N.K.Sinha, S.Banerjee, D.Roy, D.Chattopadhyay, S

compound

source

Molecule: Defensin
Chain: A

Organism_scientific: Caretta Caretta
Organism_common: Loggerhead Turtle
Organism_taxid: 8467
Tissue: Egg-White

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Small cationic protein from a marine turtle has beta-defensin-like fold and antibacterial and antiviral activity., Chattopadhyay S, Sinha NK, Banerjee S, Roy D, Chattopadhyay D, Roy S, Proteins. 2006 Aug 1;64(2):524-31. PMID:16700051

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]

Biological Unit Coordinates (2b5b.pdb1.gz) 10 Kb

CSU: Contacts of Structural Units for 2B5B

Original NMR restraints for 2B5B from PDB

Retrieve 2B5B in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2B5B from S2C, [Save to disk]

View 2B5B in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2B5B

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2B5B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2b5b] [2b5b_A]

SWISS-PROT database: [P0CAP0]

Domain organization of [DBTEW_CARCR] by SWISSPFAM

Other resources with information on 2B5B

Community annotation for 2B5B at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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