2B6G Rna Binding Protein date Oct 01, 2005
title Rna Recognition By The Vts1 Sam Domain
authors L.W.Donaldson, P.E.Johnson
compound source
Molecule: 5'-R(Gpgpapgpgpcpupcpupgpgpcpapgpc C)-3';
Chain: B
Fragment: Smaug Recognition Element
Engineered: Yes
 Synthetic: Yes
Other_details: Rna Was Produced By T7 Polymerase Based In V Transcription;

Molecule: Vts1p
Chain: A
Fragment: Sam Domain
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Vts1p
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRNA recognition by the Vts1p SAM domain., Johnson PE, Donaldson LW, Nat Struct Mol Biol. 2006 Feb;13(2):177-8. Epub 2006 Jan 22. PMID:16429155
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (2b6g.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 2B6G
  • Original NMR restraints for 2B6G from PDB
  • Retrieve 2B6G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B6G from S2C, [Save to disk]
    • View 2B6G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2B6G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B6G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b6g_A] [2b6g_B] [2b6g]
  • SWISS-PROT database: [Q08831]
  • Belongs to the synaptosomal vesicle fusion pore (svf-pore) family according to TCDB.
  • Domain organization of [VTS1_YEAST] by SWISSPFAM
  • Domain found in 2B6G: [SAM ] by SMART
    • Other resources with information on 2B6G
  • Community annotation for 2B6G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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