2B6H Protein Transport date Oct 01, 2005
title Structure Of Human Adp-Ribosylation Factor 5
authors W.Tempel, A.Atanassova, E.Sundarajan, S.Dimov, I.Shehab, J.Lew, C.Arrowsmith, A.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H. Structural Genomics Consortium (Sgc)
compound source
Molecule: Adp-Ribosylation Factor 5
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arf5
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28a-Lic
symmetry Space Group: C 2 2 21
R_factor 0.201 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.996 81.640 84.399 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.76 Å
ligand CL, GDP, SO4, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2b6h.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (2b6h.pdb2.gz) 59 Kb
  • Biological Unit Coordinates (2b6h.pdb3.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 2B6H
  • CSU: Contacts of Structural Units for 2B6H
  • Likely Quarternary Molecular Structure file(s) for 2B6H
  • Structure Factors (268 Kb)
  • Retrieve 2B6H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B6H from S2C, [Save to disk]
  • Re-refined 2b6h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2B6H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2B6H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B6H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b6h] [2b6h_A]
  • SWISS-PROT database: [P84085]
  • Domain organization of [ARF5_HUMAN] by SWISSPFAM
  • Domain found in 2B6H: [ARF ] by SMART
    • Other resources with information on 2B6H
  • Community annotation for 2B6H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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