2B7D	Blood Clotting	date	Oct 04, 2005
title	Factor Viia Inhibitors: Chemical Optimization, Preclinical Pharmacokinetics, Pharmacodynamics, And Efficacy In A Baboo Thrombosis Model
authors	W.B.Young, J.Mordenti, S.Torkelson, W.D.Shrader, A.Kolesnikov, R. L.Liu, H.Hu, E.M.Leahy, M.J.Green, P.A.Sprengeler, B.A.Katz, C.Yu J.W.Janc, K.C.Elrod, U.M.Marzec, S.R.Hanson
compound		source
Molecule: Coagulation Factor Vii Chain: L Fragment: Light Chain Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek 293 Expression_system_atcc_number: Crl-1573
Molecule: Coagulation Factor Vii Chain: H Fragment: Heavy Chain Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa; Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek 293 Expression_system_atcc_number: Crl-1573
Molecule: Tissue Factor Chain: T Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F3 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.247 R_Free 0.289
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.700 69.030 78.190 90.00 89.49 90.00
method	X-Ray Diffraction	resolution	2.24 Å
ligand	C1B	enzyme	Hydrolase E.C.3.4.21.21 BRENDA
Gene Ontology	Chain Function Process Component H L T
Primary reference	Factor VIIa inhibitors: Chemical optimization, preclinical pharmacokinetics, pharmacodynamics, and efficacy in an arterial baboon thrombosis model., Young WB, Mordenti J, Torkelson S, Shrader WD, Kolesnikov A, Rai R, Liu L, Hu H, Leahy EM, Green MJ, Sprengeler PA, Katz BA, Yu C, Janc JW, Elrod KC, Marzec UM, Hanson SR, Bioorg Med Chem Lett. 2006 Jan 10;. PMID:16412633

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (2b7d.pdb1.gz) 86 Kb LPC: Ligand-Protein Contacts for 2B7D CSU: Contacts of Structural Units for 2B7D Likely Quarternary Molecular Structure file(s) for 2B7D Structure Factors (286 Kb) Retrieve 2B7D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2B7D from S2C, [Save to disk] Re-refined 2b7d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2B7D in 3D

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Visual 3D analysis of 2B7D

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2B7D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2b7d_L] [2b7d_T] [2b7d] [2b7d_H] SWISS-PROT database: [P08709] [P13726] Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM Domains found in 2B7D: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART

Other resources with information on 2B7D

Community annotation for 2B7D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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