2B7E Structural Protein date Oct 04, 2005
title First Ff Domain Of Prp40 Yeast Protein
authors A.Gasch, S.Wiesner, P.Martin-Malpartida, X.Ramirez-Espain, L.Rui M.J.Macias
compound source
Molecule: Pre-Mrna Processing Protein Prp40
Chain: A
Fragment: Ff1 Domain (Residues 134-189)
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Prp40
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
note 2B7E is a representative structure
Primary referenceThe structure of Prp40 FF1 domain and its interaction with the crn-TPR1 motif of Clf1 gives a new insight into the binding mode of FF domains., Gasch A, Wiesner S, Martin-Malpartida P, Ramirez-Espain X, Ruiz L, Macias MJ, J Biol Chem. 2006 Jan 6;281(1):356-64. Epub 2005 Oct 27. PMID:16253993
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (2b7e.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 2B7E
  • Original NMR restraints for 2B7E from PDB
  • Retrieve 2B7E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B7E from S2C, [Save to disk]
    • View 2B7E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2B7E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B7E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b7e_A] [2b7e]
  • SWISS-PROT database: [P33203]
  • Domain organization of [PRP40_YEAST] by SWISSPFAM
  • Domain found in 2B7E: [FF ] by SMART
    • Other resources with information on 2B7E
  • Community annotation for 2B7E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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