2B8I Lipid Binding Protein date Oct 07, 2005
title Crystal Structure And Functional Studies Reveal That Pas Fac Vibrio Vulnificus Is A Novel Member Of The Saposin-Fold Fam
authors J.H.Lee, S.T.Yang, S.H.Rho, Y.J.Im, S.Y.Kim, Y.R.Kim, M.K.Kim, G.B. J.I.Kim, J.H.Rhee, S.H.Eom
compound source
Molecule: Pas Factor
Chain: A
Engineered: Yes
 Organism_scientific: Vibrio Vulnificus
Organism_taxid: 672
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Plasmid
Expression_system_plasmid: Pgex4t-1
symmetry Space Group: F 2 2 2
R_factor 0.199 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.157 75.192 80.206 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
Primary referenceCrystal Structure and Functional Studies Reveal that PAS Factor from Vibrio vulnificus is a Novel Member of the Saposin-fold Family., Lee JH, Yang ST, Rho SH, Im YJ, Kim SY, Kim YR, Kim MK, Kang GB, Kim JI, Rhee JH, Eom SH, J Mol Biol. 2006 Jan 20;355(3):491-500. Epub 2005 Nov 14. PMID:16318855
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (2b8i.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2B8I
  • Likely Quarternary Molecular Structure file(s) for 2B8I
  • Structure Factors (66 Kb)
  • Retrieve 2B8I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B8I from S2C, [Save to disk]
  • Re-refined 2b8i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2B8I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2B8I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B8I, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b8i] [2b8i_A]
  • SWISS-PROT database: [Q56GA4]
  • Domain organization of [Q56GA4_VIBVU] by SWISSPFAM
    • Other resources with information on 2B8I
  • Community annotation for 2B8I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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