2B8N	Crystal structure of Glycerate kinase (EC 2.7.1.31) (tm1585) from THERMOTOGA MARITIMA at 2.70 A resolution	date
authors	JCSG, Joint.Center.for.Structural.Genomics.
compound		source
symmetry		R_factor R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.53
ligand	MSE	enzyme
note	2B8N supersedes 1O0U
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of a glycerate kinase (TM1585) from Thermotoga maritima at 2.70 A resolution reveals a new fold., Schwarzenbacher R, McMullan D, Krishna SS, Xu Q, Miller MD, Canaves JM, Elsliger MA, Floyd R, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, McPhillips TM, Morse AT, Quijano K, Spraggon G, Stevens RC, van den Bedem H, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, Proteins. 2006 Oct 1;65(1):243-8. PMID:16865707

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk] Biological Unit Coordinates (2b8n.pdb1.gz) 63 Kb Biological Unit Coordinates (2b8n.pdb2.gz) 62 Kb LPC: Ligand-Protein Contacts for 2B8N CSU: Contacts of Structural Units for 2B8N Likely Quarternary Molecular Structure file(s) for 2B8N Structure Factors (2425 Kb) Retrieve 2B8N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2B8N from S2C, [Save to disk] Re-refined 2b8n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2B8N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2B8N

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2B8N, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2b8n_B] [2b8n] [2b8n_A] SWISS-PROT database: [Q9X1S1] Domain organization of [Q9X1S1_THEMA] by SWISSPFAM

Other resources with information on 2B8N

Community annotation for 2B8N at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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