OCA Atlas for 2B9K

2B9K

Antibiotic

date

Oct 11, 2005

title

Solution Structure Of Lci, An Amp From Bacillus Subtilis

authors

B.Xia, W.Gong, G.Lu

compound

source

Molecule: Antimicrobial Peptide Lci
Chain: A
Synonym: Amp
Engineered: Yes

Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: A014
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Roseta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a

method

Solution NMR

note

2B9K is a representative structure

Gene
Ontology

Chain	Function	Process	Component
A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk]

Biological Unit Coordinates (2b9k.pdb1.gz) 13 Kb

CSU: Contacts of Structural Units for 2B9K

Original NMR restraints for 2B9K from PDB

Retrieve 2B9K in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2B9K from S2C, [Save to disk]

View 2B9K in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2B9K

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2B9K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2b9k] [2b9k_A]

SWISS-PROT database: [P82243]

Domain organization of [BLCI_BACSU] by SWISSPFAM

Other resources with information on 2B9K

Community annotation for 2B9K at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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