2BA2 Structural Genomics, Unknown Function date Oct 13, 2005
title Crystal Structure Of The Duf16 Domain Of Mpn010 From Mycopla Pneumoniae
authors D.H.Shin, J.S.Kim, H.Yokota, R.Kim, S.H.Kim, Berkeley Structura Genomics Center (Bsgc)
compound source
Molecule: Hypothetical Upf0134 Protein Mpn010
Chain: A, B, C
Fragment: Duf16 Domain, Residues 46-130
Synonym: D12_orf131
Engineered: Yes
Organism_scientific: Mycoplasma Pneumoniae
Organism_taxid: 2104
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3), Psjs1244
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pb3, Pet21a Derived
symmetry Space Group: P 1 21 1
R_factor 0.229 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.559 38.874 68.734 90.00 99.21 90.00
method X-Ray Diffractionresolution 1.80 Å
Primary referenceCrystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae., Shin DH, Kim JS, Yokota H, Kim R, Kim SH, Protein Sci. 2006 Mar 7;. PMID:16522803
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2ba2.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 2BA2
  • Likely Quarternary Molecular Structure file(s) for 2BA2
  • Structure Factors (231 Kb)
  • Retrieve 2BA2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BA2 from S2C, [Save to disk]
  • Re-refined 2ba2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BA2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BA2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BA2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h2ba2, region A:155-326 [Jmol] [rasmolscript] [script source]
        - Domain d1l2ba2, region A:2-134 [Jmol] [rasmolscript] [script source]
        - Domain d1j2ba2, region A:7-360 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ba2_B] [2ba2] [2ba2_C] [2ba2_A]
  • SWISS-PROT database: [P75103]
  • Domain organization of [Y010_MYCPN] by SWISSPFAM
  • Other resources with information on 2BA2
  • Community annotation for 2BA2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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