2BAK Transferase date Oct 14, 2005
title P38alpha Map Kinase Bound To Mpaq
authors S.Gerhardt, J.Breed, R.A.Pauptit, J.Read, R.A.Norman, W.H.Ward
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase P38 Alpha
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pt73.3
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.332 75.840 78.112 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand AQZ enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePrevention of MKK6-Dependent Activation by Binding to p38alpha MAP Kinase., Sullivan JE, Holdgate GA, Campbell D, Timms D, Gerhardt S, Breed J, Breeze AL, Bermingham A, Pauptit RA, Norman RA, Embrey KJ, Read J, Vanscyoc WS, Ward WH, Biochemistry. 2005 Dec 20;44(50):16475-90. PMID:16342939
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (2bak.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 2BAK
  • CSU: Contacts of Structural Units for 2BAK
  • Likely Quarternary Molecular Structure file(s) for 2BAK
  • Structure Factors (144 Kb)
  • Retrieve 2BAK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BAK from S2C, [Save to disk]
  • Re-refined 2bak structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BAK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BAK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BAK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bak] [2bak_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 2BAK: [S_TKc ] by SMART
  • Other resources with information on 2BAK
  • Community annotation for 2BAK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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