2BAN Transferase date Oct 14, 2005
title Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In Com Janssen-R157208
authors K.Das, E.Arnold
compound source
Molecule: Reverse Transcriptase P66 Subunit
Chain: A
Fragment: Residues 599-1158
Synonym: Hiv-1 Rt
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Strain: Bh10 Isolate
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: Hiv-1 Clone 12

Molecule: Reverse Transcriptase P51 Subunit
Chain: B
Fragment: Residues 599-1028
Synonym: Hiv-1 Rt
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Strain: Bh10 Isolate
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: Hiv-1 Clone 12
symmetry Space Group: C 1 2 1
R_factor 0.243 R_Free 0.305
crystal
cell
length a length b length c angle alpha angle beta angle gamma
226.240 69.430 104.450 90.00 106.49 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand 357, MN enzyme Transferase E.C.2.7.7.49 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCrystal structures for HIV-1 reverse transcriptase in complexes with three pyridinone derivatives: a new class of non-nucleoside inhibitors effective against a broad range of drug-resistant strains., Himmel DM, Das K, Clark AD Jr, Hughes SH, Benjahad A, Oumouch S, Guillemont J, Coupa S, Poncelet A, Csoka I, Meyer C, Andries K, Nguyen CH, Grierson DS, Arnold E, J Med Chem 2005 Dec 1;48(24):7582-91. PMID:16302798
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (2ban.pdb1.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 2BAN
  • CSU: Contacts of Structural Units for 2BAN
  • Likely Quarternary Molecular Structure file(s) for 2BAN
  • Structure Factors (251 Kb)
  • Retrieve 2BAN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BAN from S2C, [Save to disk]
  • Re-refined 2ban structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BAN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BAN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BAN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ban_B] [2ban] [2ban_A]
  • SWISS-PROT database: [P03366]
  • Domain organization of [POL_HV1B1] by SWISSPFAM
  • Other resources with information on 2BAN
  • Community annotation for 2BAN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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