2BB9 Hydrolase date Oct 17, 2005
title Structure Of Hiv1 Protease And Akc4p_133a Complex.
authors A.B.Smith Iii, A.K.Charnley, L.C.Kuo, S.Munshi
compound source
Molecule: Protease
Chain: A, B
Ec: 3.4.23.16
Engineered: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Gag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-3b-Hivpr
symmetry Space Group: P 21 21 2
R_factor 0.237 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.238 86.180 46.533 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand AKC enzyme Hydrolase E.C.3.4.23.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDesign, synthesis, and biological evaluation of monopyrrolinone-based HIV-1 protease inhibitors possessing augmented P2' side chains., Smith AB 3rd, Charnley AK, Harada H, Beiger JJ, Cantin LD, Kenesky CS, Hirschmann R, Munshi S, Olsen DB, Stahlhut MW, Schleif WA, Kuo LC, Bioorg Med Chem Lett. 2006 Feb 15;16(4):859-63. Epub 2005 Nov 18. PMID:16298527
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2bb9.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2BB9
  • CSU: Contacts of Structural Units for 2BB9
  • Likely Quarternary Molecular Structure file(s) for 2BB9
  • Retrieve 2BB9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BB9 from S2C, [Save to disk]
  • View 2BB9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BB9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BB9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bb9] [2bb9_B] [2bb9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2BB9
  • Community annotation for 2BB9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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