2BCP Oxidoreductase date Oct 19, 2005
title Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: With Azide
authors W.H.Boles, T.C.Mallett
compound source
Molecule: Nadh Oxidase
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Streptococcus Pyogenes
Organism_taxid: 1314
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1-Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrchis A
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.320 85.085 148.456 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand AZI, FAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Analysis of Streptococcus pyogenes NADH Oxidase: Conformational Dynamics Involved in Formation of the C(4a)-Peroxyflavin Intermediate., Wallen JR, Mallett TC, Okuno T, Parsonage D, Sakai H, Tsukihara T, Claiborne A, Biochemistry. 2015 Nov 17;54(45):6815-29. doi: 10.1021/acs.biochem.5b00676. Epub , 2015 Nov 6. PMID:26506002
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (2bcp.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 2BCP
  • CSU: Contacts of Structural Units for 2BCP
  • Likely Quarternary Molecular Structure file(s) for 2BCP
  • Structure Factors (781 Kb)
  • Retrieve 2BCP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BCP from S2C, [Save to disk]
  • Re-refined 2bcp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BCP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BCP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BCP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bcp_A] [2bcp_B] [2bcp]
  • SWISS-PROT database: [Q1JBR0]
  • Domain organization of [Q1JBR0_STRPB] by SWISSPFAM
  • Other resources with information on 2BCP
  • Community annotation for 2BCP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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