2BCU	Transferase, Lyase Dna	date	Oct 19, 2005
title	Dna Polymerase Lambda In Complex With A Dna Duplex Containin Unpaired Damp And A T:T Mismatch
authors	M.Garcia-Diaz, K.Bebenek, J.M.Krahn, L.C.Pedersen, T.A.Kunkel
compound		source
Molecule: 5'-D(Pgpcpcpg)-3' Chain: D Engineered: Yes Other_details: Template		Synthetic: Yes
Molecule: 5'-D(Cpapgptptpcpg)-3' Chain: P Engineered: Yes Other_details: Primer		Synthetic: Yes
Molecule: 5'-D(Cpgpgpcpcpgpaptpapcptpg)-3' Chain: T Engineered: Yes Other_details: Downstream Primer		Synthetic: Yes
Molecule: Dna Polymerase Lambda Chain: A Synonym: Pol Lambda, Dna Polymerase Kappa, Dna Polymerase B Beta2; Ec: 2.7.7.7, 4.2.99.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-22b
symmetry	Space Group: P 21 21 21	R_factor 0.219 R_Free 0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.998 62.667 140.494 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	NA, PPV	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase., Garcia-Diaz M, Bebenek K, Krahn JM, Pedersen LC, Kunkel TA, Cell. 2006 Jan 27;124(2):331-42. PMID:16439207

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk] Biological Unit Coordinates (2bcu.pdb1.gz) 65 Kb LPC: Ligand-Protein Contacts for 2BCU CSU: Contacts of Structural Units for 2BCU Likely Quarternary Molecular Structure file(s) for 2BCU Structure Factors (348 Kb) Retrieve 2BCU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BCU from S2C, [Save to disk] Re-refined 2bcu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BCU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BCU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BCU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bcu_P] [2bcu] [2bcu_A] [2bcu_D] [2bcu_T] SWISS-PROT database: [Q9UGP5] Domain organization of [DPOLL_HUMAN] by SWISSPFAM Domains found in 2BCU: [HhH1] [POLXc ] by SMART

Other resources with information on 2BCU

Community annotation for 2BCU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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