2BGJ Oxidoreductase date Dec 23, 2004
title X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From Rho Capsulatus At 2.1 Angstroms
authors J.I.Perez-Dorado, J.A.Hermoso, I.Nogues, S.Frago, C.Bittel, S.G.M C.Gomez-Moreno, M.Medina, N.Cortez, N.Carrillo
compound source
Molecule: Ferredoxin-Nadp(H) Reductase
Chain: A, B, C, D
Ec: 1.18.1.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Rhodobacter Capsulatus
Organism_taxid: 1061
Strain: 37b4
Variant: Dsm938
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.290 93.626 103.427 90.00 90.08 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand FAD enzyme Oxidoreductase E.C.1.18.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe ferredoxin-NADP(H) reductase from Rhodobacter capsulatus: molecular structure and catalytic mechanism., Nogues I, Perez-Dorado I, Frago S, Bittel C, Mayhew SG, Gomez-Moreno C, Hermoso JA, Medina M, Cortez N, Carrillo N, Biochemistry. 2005 Sep 6;44(35):11730-40. PMID:16128574
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (2bgj.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (2bgj.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (2bgj.pdb3.gz) 47 Kb
  • Biological Unit Coordinates (2bgj.pdb4.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 2BGJ
  • CSU: Contacts of Structural Units for 2BGJ
  • Likely Quarternary Molecular Structure file(s) for 2BGJ
  • Structure Factors (553 Kb)
  • Retrieve 2BGJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BGJ from S2C, [Save to disk]
  • Re-refined 2bgj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BGJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BGJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BGJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bgj_C] [2bgj_B] [2bgj] [2bgj_D] [2bgj_A]
  • SWISS-PROT database: [Q9L6V3]
  • Domain organization of [Q9L6V3_RHOCA] by SWISSPFAM
  • Other resources with information on 2BGJ
  • Community annotation for 2BGJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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