2BHV Bacterial Protein date Jan 18, 2005
title Structure Of Comb10 Of The Com Type Iv Secretion System Of Helicobacter Pylori
authors L.Terradot, C.Oomen, R.Bayliss, G.Leonard, G.Waksman
compound source
Molecule: Comb10
Chain: A, B, C, D, E, F
Fragment: Periplasmic Domain, Residues 131-376
Engineered: Yes
 Organism_scientific: Helicobacter Pylori
Organism_taxid: 210
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pproexhtc
symmetry Space Group: P 21 21 21
R_factor 0.257 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.735 139.411 168.442 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
note 2BHV is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructures of two core subunits of the bacterial type IV secretion system, VirB8 from Brucella suis and ComB10 from Helicobacter pylori., Terradot L, Bayliss R, Oomen C, Leonard GA, Baron C, Waksman G, Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4596-601. Epub 2005 Mar 11. PMID:15764702
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (2bhv.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (2bhv.pdb2.gz) 60 Kb
  • Biological Unit Coordinates (2bhv.pdb3.gz) 59 Kb
  • CSU: Contacts of Structural Units for 2BHV
  • Likely Quarternary Molecular Structure file(s) for 2BHV
  • Structure Factors (253 Kb)
  • Retrieve 2BHV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BHV from S2C, [Save to disk]
  • Re-refined 2bhv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2BHV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BHV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BHV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bhv_C] [2bhv] [2bhv_F] [2bhv_E] [2bhv_A] [2bhv_D] [2bhv_B]
  • SWISS-PROT database: [O24883]
  • Domain organization of [O24883_HELPY] by SWISSPFAM
    • Other resources with information on 2BHV
  • Community annotation for 2BHV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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