2BLZ Hydrolase date Mar 08, 2005
title Rnase After A High Dose X-Ray "Burn"
authors M.H.Nanao, R.B.Ravelli
compound source
Molecule: Ribonuclease Pancreatic
Chain: A
Synonym: Rnase 1, Rnase A
Ec: 3.1.27.5
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Pancreas
symmetry Space Group: P 32 2 1
R_factor 0.149 R_Free 0.181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.132 64.132 63.643 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.4 Å
ligand CL enzyme Hydrolase E.C.3.1.27.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • ribonuclease A activity


    • Primary referenceImproving radiation-damage substructures for RIP., Nanao MH, Sheldrick GM, Ravelli RB, Acta Crystallogr D Biol Crystallogr. 2005 Sep;61(Pt 9):1227-37. Epub 2005, Aug 16. PMID:16131756
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2blz.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2BLZ
  • CSU: Contacts of Structural Units for 2BLZ
  • Likely Quarternary Molecular Structure file(s) for 2BLZ
  • Structure Factors (213 Kb)
  • Retrieve 2BLZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BLZ from S2C, [Save to disk]
  • Re-refined 2blz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2BLZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BLZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BLZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2blz] [2blz_A]
  • SWISS-PROT database: [P61823]
  • Domain organization of [RNAS1_BOVIN] by SWISSPFAM
  • Domain found in 2BLZ: [RNAse_Pc ] by SMART
    • Other resources with information on 2BLZ
  • Community annotation for 2BLZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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