2BM8 Porin date Mar 10, 2005
title Cmci-N160 Apo-Structure
authors L.M.Oster, D.R.Lester, A.Terwisscha Van Scheltinga, M.Svenda, C. I.Andersson
compound source
Molecule: Cephalosporin Hydroxylase Cmci
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Engineered: Yes
Mutation: Yes
Other_details: Cis-Peptide Bond Betweeen His153 And Pro154. And Asp187 Are Ramachandran Outliers
Organism_scientific: Streptomyces Clavuligerus
Organism_taxid: 1901
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet32 Xalic
symmetry Space Group: P 1 21 1
R_factor 0.192 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.652 182.640 103.236 90.00 91.05 90.00
method X-Ray Diffractionresolution 2.5 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceInsights into cephamycin biosynthesis: the crystal structure of CmcI from Streptomyces clavuligerus., Oster LM, Lester DR, Terwisscha van Scheltinga A, Svenda M, van Lun M, Genereux C, Andersson I, J Mol Biol. 2006 Apr 28;358(2):546-58. Epub 2006 Feb 21. PMID:16527306
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (478 Kb) [Save to disk]
  • Biological Unit Coordinates (2bm8.pdb1.gz) 237 Kb
  • Biological Unit Coordinates (2bm8.pdb2.gz) 239 Kb
  • CSU: Contacts of Structural Units for 2BM8
  • Likely Quarternary Molecular Structure file(s) for 2BM8
  • Structure Factors (1666 Kb)
  • Retrieve 2BM8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BM8 from S2C, [Save to disk]
  • Re-refined 2bm8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BM8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BM8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BM8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bm8_J] [2bm8_C] [2bm8_F] [2bm8_I] [2bm8_H] [2bm8_A] [2bm8_D] [2bm8_B] [2bm8_E] [2bm8] [2bm8_L] [2bm8_G] [2bm8_K]
  • SWISS-PROT database: [O85726]
  • Domain organization of [O85726_STRCL] by SWISSPFAM
  • Other resources with information on 2BM8
  • Community annotation for 2BM8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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