2BMH Oxidoreductase(Oxygenase) date May 17, 1994
title Modeling Protein-Substrate Interactions In The Heme Domain O Cytochrome P450bm-3
authors H.Li, T.L.Poulos
compound source
Molecule: Cytochrome P450 Bm-3
Chain: A, B
Ec: 1.14.14.1
Engineered: Yes
 Organism_scientific: Bacillus Megaterium
Organism_taxid: 1404
symmetry Space Group: P 1 21 1
R_factor 0.184 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.530 154.030 62.430 90.00 94.97 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand HEM enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
related structures by homologous chain: 1JME, 1SMI
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceModeling protein-substrate interactions in the heme domain of cytochrome P450(BM-3)., Li H, Poulos TL, Acta Crystallogr D Biol Crystallogr. 1995 Jan 1;51(Pt 1):21-32. PMID:15299332
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (2bmh.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (2bmh.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 2BMH
  • CSU: Contacts of Structural Units for 2BMH
  • Likely Quarternary Molecular Structure file(s) for 2BMH
  • Structure Factors (431 Kb)
  • Retrieve 2BMH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BMH from S2C, [Save to disk]
  • Re-refined 2bmh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2BMH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BMH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BMH, from MSDmotif at EBI
  • Genome occurence of 2BMH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2bmha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2bmhb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bmh_A] [2bmh_B] [2bmh]
  • SWISS-PROT database: [P14779]
  • Domain organization of [CPXB_BACME] by SWISSPFAM
    • Other resources with information on 2BMH
  • Community annotation for 2BMH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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