2BMR	Oxidoreductase	date	Mar 15, 2005
title	The Crystal Structure Of Nitrobenzene Dioxygenase In Complex Nitrotoluene
authors	R.Friemann, M.M.Ivkovic-Jensen, D.J.Lessner, C.Yu, D.T.Gibson, R.E.Parales, H.Eklund, S.Ramaswamy
compound		source
Molecule: Oxygenase-Alpha Nbdo Chain: A Synonym: Nitrobenzene Dioxygenase Engineered: Yes		Organism_scientific: Comamonas Sp. Organism_taxid: 58226 Strain: Js765 Expression_system: Escherichia Coli Dh5[Alpha] Expression_system_taxid: 668369 Expression_system_vector: Puc18 Expression_system_plasmid: Pdtg927 Other_details: Waste Treatment Plant In New Jersey. (Sf Nis Jc Spain. 1995. Appl. Environ. Microbiol.;
Molecule: Oxygenase-Beta Nbdo Chain: B Synonym: Nitrobenzene Dioxygenase Engineered: Yes		Organism_scientific: Comamonas Sp. Organism_taxid: 58226 Strain: Js765 Expression_system: Escherichia Coli Dh5[Alpha] Expression_system_taxid: 668369 Expression_system_vector: Puc18 Expression_system_plasmid: Pdtg927 Other_details: Waste Treatment Plant In New Jersey. (Sf Nis Jc Spain. 1995. Appl. Environ. Microbiol. 61\: 2308-2313)
symmetry	Space Group: P 63	R_factor 0.169 R_Free 0.191
crystal cell	length a length b length c angle alpha angle beta angle gamma 121.625 121.625 84.002 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	3NT, EDO, EOH, FE, FES, NI	enzyme
related structures	by homologous chain: 1O7N, 2BMQ
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase., Friemann R, Ivkovic-Jensen MM, Lessner DJ, Yu CL, Gibson DT, Parales RE, Eklund H, Ramaswamy S, J Mol Biol. 2005 May 20;348(5):1139-51. Epub 2005 Apr 7. PMID:15854650

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk] Biological Unit Coordinates (2bmr.pdb1.gz) 358 Kb LPC: Ligand-Protein Contacts for 2BMR CSU: Contacts of Structural Units for 2BMR Likely Quarternary Molecular Structure file(s) for 2BMR Structure Factors (835 Kb) Retrieve 2BMR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BMR from S2C, [Save to disk] Re-refined 2bmr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BMR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BMR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BMR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bmr_B] [2bmr_A] [2bmr] SWISS-PROT database: [Q8RTL3] [Q8RTL4] Domain organization of [Q8RTL3_9BURK] [Q8RTL4_9BURK] by SWISSPFAM

Other resources with information on 2BMR

Community annotation for 2BMR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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