2BN7 Hydrolase date Mar 22, 2005
title Mn Substituted E. Coli Aminopeptidase P In Complex With Prod
authors S.C.Graham, C.S.Bond, H.C.Freeman, J.M.Guss
compound source
Molecule: Xaa-Pro Aminopeptidase
Chain: A
Synonym: Aminopeptidase P, X-Pro Aminopeptidase, Amino- Pep II, App-II, Aminoacylproline Aminopeptidase;
Ec: 3.4.11.9
Engineered: Yes
Other_details: Dipeptide Product Of Aminopeptidase P (Forme Clevage Of Xaa-Pro-Leu Tripeptide Substrate)
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: An1459
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: An1459
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppl670
symmetry Space Group: I 41 2 2
R_factor 0.165 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.695 139.695 230.674 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand FLC, LEU, MG, MN, PRO, ZN enzyme Hydrolase E.C.3.4.11.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional implications of metal ion selection in aminopeptidase P, a metalloprotease with a dinuclear metal center., Graham SC, Bond CS, Freeman HC, Guss JM, Biochemistry. 2005 Oct 25;44(42):13820-36. PMID:16229471
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (2bn7.pdb1.gz) 294 Kb
  • LPC: Ligand-Protein Contacts for 2BN7
  • CSU: Contacts of Structural Units for 2BN7
  • Likely Quarternary Molecular Structure file(s) for 2BN7
  • Structure Factors (336 Kb)
  • Retrieve 2BN7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BN7 from S2C, [Save to disk]
  • Re-refined 2bn7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BN7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BN7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BN7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bn7_A] [2bn7]
  • SWISS-PROT database: [P15034]
  • Domain organization of [AMPP_ECOLI] by SWISSPFAM
  • Domain found in 2BN7: [AMP_N ] by SMART
  • Other resources with information on 2BN7
  • Community annotation for 2BN7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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