2BOA Hydrolase date Apr 08, 2005
title Human Procarboxypeptidase A4.
authors R.Garcia-Castellanos, R.Bonet-Figueredo, I.Pallares, S.Ventura, F.X.Aviles, J.Vendrell, F.X.Gomis-Ruth
compound source
Molecule: Carboxypeptidase A4
Chain: A, B
Fragment: Alphabeta-Hydrolase Domain, Residues 18-421
Synonym: Carboxypeptidase A3
Engineered: Yes
Other_details: N-Glycosylation At Asn148 In Both Copies Pre
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_plasmid: Ppic9
symmetry Space Group: C 1 2 1
R_factor 0.220 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.800 87.200 89.700 90.00 117.20 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GOL, NAG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDetailed molecular comparison between the inhibition mode of A/B-type carboxypeptidases in the zymogen state and by the endogenous inhibitor latexin., Garcia-Castellanos R, Bonet-Figueredo R, Pallares I, Ventura S, Aviles FX, Vendrell J, Gomis-Rutha FX, Cell Mol Life Sci. 2005 Sep;62(17):1996-2014. PMID:16091843
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (2boa.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (2boa.pdb2.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 2BOA
  • CSU: Contacts of Structural Units for 2BOA
  • Likely Quarternary Molecular Structure file(s) for 2BOA
  • Retrieve 2BOA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BOA from S2C, [Save to disk]
  • View 2BOA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BOA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BOA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2boa_B] [2boa] [2boa_A]
  • SWISS-PROT database: [Q9UI42]
  • Domain organization of [CBPA4_HUMAN] by SWISSPFAM
  • Domain found in 2BOA: [Zn_pept ] by SMART
  • Other resources with information on 2BOA
  • Community annotation for 2BOA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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