2BOH	Hydrolase Inhibitor	date	Apr 11, 2005
title	Crystal Structure Of Factor Xa In Complex With Compound "1"
authors	M.Nazare, D.W.Will, H.Matter, H.Schreuder, K.Ritter, M.Urmann, M.E A.Bauer, M.Wagner, J.Czech, V.Laux, V.Wehner
compound		source
Molecule: Coagulation Factor Xa Chain: A Fragment: Light Chain, Residues 126-234 Synonym: Stuart Factor, Stuart-Prower Factor Ec: 3.4.21.6		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood
Molecule: Coagulation Factor Xa Chain: B Fragment: Light Chain, Residues 235-488 Synonym: Stuart Factor, Stuart-Prower Factor Ec: 3.4.21.6		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood
symmetry	Space Group: P 21 21 21	R_factor 0.207 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.100 72.200 79.200 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CA, IIA BindingDB	enzyme	Hydrolase E.C.3.4.21.6 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Probing the subpockets of factor Xa reveals two binding modes for inhibitors based on a 2-carboxyindole scaffold: a study combining structure-activity relationship and X-ray crystallography., Nazare M, Will DW, Matter H, Schreuder H, Ritter K, Urmann M, Essrich M, Bauer A, Wagner M, Czech J, Lorenz M, Laux V, Wehner V, J Med Chem. 2005 Jul 14;48(14):4511-25. PMID:15999990

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (2boh.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 2BOH CSU: Contacts of Structural Units for 2BOH Likely Quarternary Molecular Structure file(s) for 2BOH Structure Factors (134 Kb) Retrieve 2BOH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BOH from S2C, [Save to disk] Re-refined 2boh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BOH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BOH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BOH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2boh_B] [2boh] [2boh_A] SWISS-PROT database: [P00742] Domain organization of [FA10_HUMAN] by SWISSPFAM Domains found in 2BOH: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART

Other resources with information on 2BOH

Community annotation for 2BOH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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