2BOJ Lectin date Apr 12, 2005
title Crystal Structure Of Pseudomonas Aeruginosa Lectin (Pa-Iil) With Methyl-B-D-Arabinopyranoside
authors C.D.Sabin, E.P.Mitchell, M.Wimmerova, A.Imberty
compound source
Molecule: Pseudomonas Aeruginosa Lectin II
Chain: A, B, C, D
Synonym: Pa-Iil
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 208964
Strain: Pao1
Atcc: 15692
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet25
Expression_system_plasmid: Pet25paiil
symmetry Space Group: P 1 21 1
R_factor 0.136 R_Free 0.172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.636 80.168 52.517 90.00 109.92 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ARW, CA, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceBinding of different monosaccharides by lectin PA-IIL from Pseudomonas aeruginosa: thermodynamics data correlated with X-ray structures., Sabin C, Mitchell EP, Pokorna M, Gautier C, Utille JP, Wimmerova M, Imberty A, FEBS Lett. 2006 Feb 6;580(3):982-7. Epub 2006 Jan 19. PMID:16438968
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (2boj.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 2BOJ
  • CSU: Contacts of Structural Units for 2BOJ
  • Likely Quarternary Molecular Structure file(s) for 2BOJ
  • Structure Factors (480 Kb)
  • Retrieve 2BOJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BOJ from S2C, [Save to disk]
  • Re-refined 2boj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BOJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BOJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BOJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2boj_A] [2boj] [2boj_D] [2boj_B] [2boj_C]
  • SWISS-PROT database: [Q9HYN5]
  • Domain organization of [Q9HYN5_PSEAE] by SWISSPFAM
  • Other resources with information on 2BOJ
  • Community annotation for 2BOJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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