2BOO	Hydrolase	date	Apr 13, 2005
title	The Crystal Structure Of Uracil-Dna N-Glycosylase (Ung) From Deinococcus Radiodurans.
authors	I.Leiros, E.Moe, A.O.Smalas, S.Mcsweeney
compound		source
Molecule: Uracil-Dna Glycosylase Chain: A Synonym: Udg Ec: 3.2.2.3 Engineered: Yes Other_details: Residues 1-16 And 247 Not Visible In Electro		Organism_scientific: Deinococcus Radiodurans Organism_taxid: 243230 Strain: R1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: P 21 21 2	R_factor 0.234 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.500 85.100 85.900 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	NO3	enzyme	Hydrolase E.C.3.2.2.3 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the uracil-DNA N-glycosylase (UNG) from Deinococcus radiodurans., Leiros I, Moe E, Smalas AO, McSweeney S, Acta Crystallogr D Biol Crystallogr. 2005 Aug;61(Pt 8):1049-56. Epub 2005, Jul 20. PMID:16041069

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (2boo.pdb1.gz) 40 Kb LPC: Ligand-Protein Contacts for 2BOO CSU: Contacts of Structural Units for 2BOO Likely Quarternary Molecular Structure file(s) for 2BOO Structure Factors (294 Kb) Retrieve 2BOO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BOO from S2C, [Save to disk] Re-refined 2boo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BOO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BOO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BOO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2boo] [2boo_A] SWISS-PROT database: [Q9RWH9] Domain organization of [UNG_DEIRA] by SWISSPFAM Domains found in 2BOO: [UDG] [UreE_C ] by SMART

Other resources with information on 2BOO

Community annotation for 2BOO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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