2BPC	Nucleotidyltransferase	date	Jul 08, 1994
title	Crystal Structure Of Rat Dna Polymerase Beta: Evidence For A Polymerase Mechanism
authors	M.R.Sawaya, H.Pelletier, A.Kumar, S.H.Wilson, J.Kraut
compound		source
Molecule: Dna Polymerase Beta Chain: A Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Bacterial
symmetry	Space Group: P 21 21 2	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 119.807 62.633 37.085 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	MN	enzyme	Transferase E.C.2.7.7.7 BRENDA
related structures	by homologous chain: 7ICS, 8ICN
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism., Sawaya MR, Pelletier H, Kumar A, Wilson SH, Kraut J, Science 1994 Jun 24;264(5167):1930-5. PMID:7516581

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (2bpc.pdb1.gz) 41 Kb LPC: Ligand-Protein Contacts for 2BPC CSU: Contacts of Structural Units for 2BPC Likely Quarternary Molecular Structure file(s) for 2BPC Retrieve 2BPC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BPC from S2C, [Save to disk]

View 2BPC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BPC

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BPC, from MSDmotif at EBI Genome occurence of 2BPC's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d2bpc_2, region 149-335 [Jmol] [rasmolscript] [script source]     - Domain d2bpc_1, region 91-148 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bpc_A] [2bpc] SWISS-PROT database: [P06766] Domain organization of [DPOLB_RAT] by SWISSPFAM Domains found in 2BPC: [HhH1] [POLXc ] by SMART

Other resources with information on 2BPC

Community annotation for 2BPC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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