2BQV Hydrolase Inhibitor date Apr 28, 2005
title Hiv-1 Protease In Complex With Inhibitor Aha455
authors T.Unge, J.K.Ekegren, H.V.Schenk, M.Zreik Safa, H.Wallberg, B.Samu A.Hallberg
compound source
Molecule: Hiv-1 Protease
Chain: A, B
Ec: 3.4.23.16
Engineered: Yes
Other_details: Complex With Inhibitor Aha455
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Variant: D10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_plasmid: Pet11d
symmetry Space Group: P 21 21 2
R_factor 0.206 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.082 87.452 47.124 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand A1A BindingDB enzyme Hydrolase E.C.3.4.23.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA new class of HIV-1 protease inhibitors containing a tertiary alcohol in the transition-state mimicking scaffold., Ekegren JK, Unge T, Safa MZ, Wallberg H, Samuelsson B, Hallberg A, J Med Chem. 2005 Dec 15;48(25):8098-102. PMID:16335934
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (2bqv.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 2BQV
  • CSU: Contacts of Structural Units for 2BQV
  • Likely Quarternary Molecular Structure file(s) for 2BQV
  • Structure Factors (109 Kb)
  • Retrieve 2BQV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BQV from S2C, [Save to disk]
  • Re-refined 2bqv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BQV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BQV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BQV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bqv_A] [2bqv] [2bqv_B]
  • SWISS-PROT database: [O92139]
  • Domain organization of [O92139_9HIV1] by SWISSPFAM
  • Other resources with information on 2BQV
  • Community annotation for 2BQV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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