2BSP Lyase date Jul 31, 1998
title Bacillus Subtilis Pectate Lyase R279k Mutant
authors R.Pickersgill
compound source
Molecule: Protein (Pectate Lyase)
Chain: A
Ec: 4.2.2.2
Engineered: Yes
Mutation: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: S1103
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Plyss
symmetry Space Group: P 1 21 1
R_factor 0.196 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.430 69.710 60.230 90.00 112.65 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CA enzyme Lyase E.C.4.2.2.2 BRENDA
related structures by homologous chain: 1BN8
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (2bsp.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 2BSP
  • CSU: Contacts of Structural Units for 2BSP
  • Likely Quarternary Molecular Structure file(s) for 2BSP
  • Structure Factors (257 Kb)
  • Retrieve 2BSP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BSP from S2C, [Save to disk]
  • Re-refined 2bsp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2BSP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BSP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BSP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2bspa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bsp] [2bsp_A]
  • SWISS-PROT database: [P39116]
  • Domain organization of [PEL_BACSU] by SWISSPFAM
  • Domain found in 2BSP: [Amb_all ] by SMART
    • Other resources with information on 2BSP
  • Community annotation for 2BSP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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