2BUC Hydrolase Inhibitor date Jun 09, 2005
title Crystal Structure Of Porcine Dipeptidyl Peptidase Iv (Cd26) With A Tetrahydroisoquinoline Inhibitor
authors S.Nordhoff, S.Cerezo-Galvez, A.Feurer, O.Hill, V.G.Matassa, G.Met C.Rummey, M.Thiemann, P.J.Edwards
compound source
Molecule: Dipeptidyl Peptidase Iv
Chain: A, B, C, D
Fragment: Extracellular Domain, Residues 39-766
Synonym: Dpp Iv, T-Cell Activation Antigen Cd26
Ec: 3.4.14.5
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Kidney Cortex
symmetry Space Group: P 1
R_factor 0.221 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.644 117.491 133.057 112.44 94.72 91.30
method X-Ray Diffractionresolution 2.50 Å
ligand 008, NAG, SO4 BindingDB enzyme Hydrolase E.C.3.4.14.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe reversed binding of beta-phenethylamine inhibitors of DPP-IV: X-ray structures and properties of novel fragment and elaborated inhibitors., Nordhoff S, Cerezo-Galvez S, Feurer A, Hill O, Matassa VG, Metz G, Rummey C, Thiemann M, Edwards PJ, Bioorg Med Chem Lett. 2006 Mar 15;16(6):1744-8. Epub 2006 Jan 11. PMID:16376544
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (503 Kb) [Save to disk]
  • Biological Unit Coordinates (2buc.pdb1.gz) 249 Kb
  • Biological Unit Coordinates (2buc.pdb2.gz) 251 Kb
  • LPC: Ligand-Protein Contacts for 2BUC
  • CSU: Contacts of Structural Units for 2BUC
  • Likely Quarternary Molecular Structure file(s) for 2BUC
  • Retrieve 2BUC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BUC from S2C, [Save to disk]
  • View 2BUC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BUC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BUC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2buc_D] [2buc_B] [2buc] [2buc_C] [2buc_A]
  • SWISS-PROT database: [P22411]
  • Domain organization of [DPP4_PIG] by SWISSPFAM
  • Other resources with information on 2BUC
  • Community annotation for 2BUC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science