2BVD Hydrolase date Jun 27, 2005
title How Family 26 Glycoside Hydrolases Orchestrate Catalysis On Polysaccharides. Structure And Activity Of A Clostridium Th Lichenase, Ctlic26a
authors E.J.Taylor, A.Goyal, C.I.P.D.Guerreiro, J.A.M.Prates, V.A.Money, C.Morland, A.Planas, J.A.Macdonald, R.V.Stick, H.J.Gilbert, C.M.G.A.Fontes, G.J.Davies
compound source
Molecule: Endoglucanase H
Chain: A
Fragment: Catalytic Domain, Residues 26-304
Synonym: Egh, Endo-1,4-Beta-Glucanase, Cellulase H, Lich26a
Ec: 3.2.1.4
Engineered: Yes
Organism_scientific: Clostridium Thermocellum
Organism_taxid: 1515
Strain: F1ys
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet21a
Expression_system_plasmid: Pcf1
symmetry Space Group: P 21 21 21
R_factor 0.154 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.272 63.012 78.182 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand ISX enzyme Hydrolase E.C.3.2.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHow family 26 glycoside hydrolases orchestrate catalysis on different polysaccharides: structure and activity of a Clostridium thermocellum lichenase, CtLic26A., Taylor EJ, Goyal A, Guerreiro CI, Prates JA, Money VA, Ferry N, Morland C, Planas A, Macdonald JA, Stick RV, Gilbert HJ, Fontes CM, Davies GJ, J Biol Chem. 2005 Sep 23;280(38):32761-7. Epub 2005 Jun 28. PMID:15987675
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (2bvd.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2BVD
  • CSU: Contacts of Structural Units for 2BVD
  • Likely Quarternary Molecular Structure file(s) for 2BVD
  • Structure Factors (434 Kb)
  • Retrieve 2BVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BVD from S2C, [Save to disk]
  • Re-refined 2bvd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BVD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BVD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bvd_A] [2bvd]
  • SWISS-PROT database: [P16218]
  • Domain organization of [GUNH_CLOTH] by SWISSPFAM
  • Other resources with information on 2BVD
  • Community annotation for 2BVD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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