2BVR	Hydrolase Hydrolase Inhibitor	date	Jul 04, 2005
title	Human Thrombin Complexed With Fragment-Based Small Molecules Occupying The S1 Pocket
authors	T.Neumann, H.D.Junker, O.Keil, K.Burkert, H.Ottleben, J.Gamer, R. H.Deppe, A.Feurer, D.Tomandl, G.Metz
compound		source
Molecule: Alpha Thrombin Chain: H Fragment: Large Subunit, Residues 364-622 Synonym: Coagulation Factor II Ec: 3.4.21.5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Hirudin Variant-2 Chain: I Engineered: Yes		Synthetic: Yes Organism_scientific: Hirudo Medicinalis Organism_common: Medicinal Leech Organism_taxid: 6421
Molecule: Alpha Thrombin Chain: L Fragment: Small Subunit, Residues 328-363 Synonym: Coagulation Factor II Ec: 3.4.21.5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.210 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.322 71.702 72.539 90.00 100.28 90.00
method	X-Ray Diffraction	resolution	1.25 Å
ligand	4CP, TYS	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
Gene Ontology	Chain Function Process Component H L

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk] Biological Unit Coordinates (2bvr.pdb1.gz) 115 Kb LPC: Ligand-Protein Contacts for 2BVR CSU: Contacts of Structural Units for 2BVR Likely Quarternary Molecular Structure file(s) for 2BVR Retrieve 2BVR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BVR from S2C, [Save to disk]

View 2BVR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BVR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BVR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bvr_I] [2bvr] [2bvr_L] [2bvr_H] SWISS-PROT database: [P00734] Domain organization of [THRB_HUMAN] by SWISSPFAM Domain found in 2BVR: [Tryp_SPc ] by SMART

Other resources with information on 2BVR

Community annotation for 2BVR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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