2BWF Signaling Protein date Jul 13, 2005
title Crystal Structure Of The Ubl Domain Of Dsk2 From S. Cerevisi
authors E.D.Lowe, N.Hasan, J.F.Trempe, L.Fonso, M.E.M.Noble, J.A.Endicot L.N.Johnson, N.R.Brown
compound source
Molecule: Ubiquitin-Like Protein Dsk2
Chain: A, B
Fragment: Ubl Domain, Residues 1-75
Engineered: Yes
Other_details: Ubiquitin-Like Domain Of Dsk2 Protein
 Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)Plyss
Expression_system_plasmid: Pgex-Kg
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.415 49.587 58.771 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.15 Å
ligand FMT enzyme
Primary referenceStructures of the Dsk2 UBL and UBA domains and their complex., Lowe ED, Hasan N, Trempe JF, Fonso L, Noble ME, Endicott JA, Johnson LN, Brown NR, Acta Crystallogr D Biol Crystallogr. 2006 Feb;62(Pt 2):177-88. Epub 2006, Jan 18. PMID:16421449
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (2bwf.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (2bwf.pdb2.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 2BWF
  • CSU: Contacts of Structural Units for 2BWF
  • Likely Quarternary Molecular Structure file(s) for 2BWF
  • Structure Factors (340 Kb)
  • Retrieve 2BWF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BWF from S2C, [Save to disk]
  • Re-refined 2bwf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2BWF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BWF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BWF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bwf_A] [2bwf] [2bwf_B]
  • SWISS-PROT database: [P48510]
  • Domain organization of [DSK2_YEAST] by SWISSPFAM
  • Domain found in 2BWF: [UBQ ] by SMART
    • Other resources with information on 2BWF
  • Community annotation for 2BWF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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