2BX7 Oxidoreductase date Jul 25, 2005
title Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense A Complex With 3,5-Dihydroxybenzoate
authors A.E.Wolfe, M.Hansen, S.G.Gattis, Y.C.Hu, E.Johansson, S.Arent, S. B.A.Palfey
compound source
Molecule: Dihydroorotate Dehydrogenase
Chain: A, B
Synonym: Dihydroorotate Oxidase A, Dhodehase A, Dhodase A,
Ec: 1.3.3.1
Engineered: Yes
Organism_scientific: Lactococcus Lactis
Organism_taxid: 1358
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.184 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.710 108.127 66.216 90.00 104.06 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand 34D, ACT, FMN, GOL, MG enzyme Oxidoreductase E.C.1.3.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInteraction of benzoate pyrimidine analogues with class 1A dihydroorotate dehydrogenase from Lactococcus lactis., Wolfe AE, Thymark M, Gattis SG, Fagan RL, Hu YC, Johansson E, Arent S, Larsen S, Palfey BA, Biochemistry. 2007 May 15;46(19):5741-53. Epub 2007 Apr 20. PMID:17444658
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (2bx7.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 2BX7
  • CSU: Contacts of Structural Units for 2BX7
  • Likely Quarternary Molecular Structure file(s) for 2BX7
  • Structure Factors (318 Kb)
  • Retrieve 2BX7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BX7 from S2C, [Save to disk]
  • Re-refined 2bx7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BX7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BX7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BX7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bx7] [2bx7_A] [2bx7_B]
  • SWISS-PROT database: [Q53ZE5]
  • Domain organization of [PYRDA_LACLC] by SWISSPFAM
  • Other resources with information on 2BX7
  • Community annotation for 2BX7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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