2C0I Transferase date Sep 03, 2005
title Src Family Kinase Hck With Bound Inhibitor A-420983
authors D.W.Borhani, A.Burchat, D.J.Calderwood, G.C.Hirst, B.Li, A.Loew
compound source
Molecule: Tyrosine-Protein Kinase Hck
Chain: A, B
Fragment: Sh3-Sh2-Sh1, Residues 80-525
Synonym: Haematopoetic Cell Kinase Hck, P59-Hckp60-Hck Hem Cell Kinase;
Ec: 2.7.1.112
Engineered: Yes
Mutation: Yes
Other_details: Src Numbering Used. Add 20 To The Residue Nu This Entry To Obtain Actual Human Hck Residue Numbers. Resi (Hck Y521) Is Phosphorylated
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Lymphocyte
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pbc Hck002
symmetry Space Group: P 1 21 1
R_factor 0.222 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.078 73.124 179.485 90.00 95.97 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA, L1G, PTR enzyme Transferase E.C.2.7.1.112 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of A-770041, a src-family selective orally active lck inhibitor that prevents organ allograft rejection., Burchat A, Borhani DW, Calderwood DJ, Hirst GC, Li B, Stachlewitz RF, Bioorg Med Chem Lett. 2006 Jan 1;16(1):118-22. Epub 2005 Oct 10. PMID:16216497
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (2c0i.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (2c0i.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 2C0I
  • CSU: Contacts of Structural Units for 2C0I
  • Likely Quarternary Molecular Structure file(s) for 2C0I
  • Structure Factors (356 Kb)
  • Retrieve 2C0I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C0I from S2C, [Save to disk]
  • Re-refined 2c0i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C0I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C0I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C0I, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c0i] [2c0i_A] [2c0i_B]
  • SWISS-PROT database: [P08631]
  • Domain organization of [HCK_HUMAN] by SWISSPFAM
  • Domains found in 2C0I: [SH2] [SH3] [TyrKc ] by SMART
  • Other resources with information on 2C0I
  • Community annotation for 2C0I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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