2C0L Transport Protein Receptor date Sep 05, 2005
title Tpr Domain Of Human Pex5p In Complex With Human Mscp2
authors W.A.Stanley, P.Kursula, M.Wilmanns
compound source
Molecule: Peroxisomal Targeting Signal 1 Receptor
Chain: A
Fragment: Tpr Repeat Domain, Residues 298-602
Synonym: Pex5p, Peroxismore Receptor 1, Peroxin-5, Peroxiso Terminal Targeting Signal Import Receptor, Pts1-Bp, Pts1 Re
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24d

Molecule: Nonspecific Lipid-Transfer Protein
Chain: B
Fragment: Scp2 Domain, Residues 426-547
Synonym: Mscp2, Sterol Carrier Protein 2, Nsl-Tp, Scp-2b, S Sterol Carrier Protein X, Scp-X, Scpx;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24d
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.480 68.620 137.390 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
Primary referenceRecognition of a functional peroxisome type 1 target by the dynamic import receptor pex5p., Stanley WA, Filipp FV, Kursula P, Schuller N, Erdmann R, Schliebs W, Sattler M, Wilmanns M, Mol Cell. 2006 Dec 8;24(5):653-63. PMID:17157249
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (2c0l.pdb1.gz) 67 Kb
  • CSU: Contacts of Structural Units for 2C0L
  • Likely Quarternary Molecular Structure file(s) for 2C0L
  • Structure Factors (133 Kb)
  • Retrieve 2C0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C0L from S2C, [Save to disk]
  • Re-refined 2c0l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C0L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C0L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C0L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c0l_A] [2c0l] [2c0l_B]
  • SWISS-PROT database: [P22307] [P50542]
  • Domain organization of [NLTP_HUMAN] [PEX5_HUMAN] by SWISSPFAM
  • Domain found in 2C0L: [TPR ] by SMART
  • Other resources with information on 2C0L
  • Community annotation for 2C0L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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