2C1F Hydrolase date Sep 14, 2005
title The Structure Of The Family 11 Xylanase From Neocallimastix Patriciarum
authors J.W.Murray, R.J.Lewis, H.J.Gilbert
compound source
Molecule: Bifunctional Endo-1,4-Beta-Xylanase A
Chain: A
Fragment: Domain 2, Residues 275-499
Synonym: Endo-1,4-Beta-Xylanase A, Xyla
Ec: 3.2.1.8
Engineered: Yes
 Organism_scientific: Neocallimastix Patriciarum
Organism_taxid: 4758
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 3
R_factor 0.166 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.336 117.336 117.336 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CD enzyme Hydrolase E.C.3.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUnderstanding the structural basis for substrate and inhibitor recognition in eukaryotic GH11 xylanases., Vardakou M, Dumon C, Murray JW, Christakopoulos P, Weiner DP, Juge N, Lewis RJ, Gilbert HJ, Flint JE, J Mol Biol. 2008 Feb 1;375(5):1293-305. Epub 2007 Nov 12. PMID:18078955
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2c1f.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2C1F
  • CSU: Contacts of Structural Units for 2C1F
  • Likely Quarternary Molecular Structure file(s) for 2C1F
  • Structure Factors (245 Kb)
  • Retrieve 2C1F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C1F from S2C, [Save to disk]
  • Re-refined 2c1f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2C1F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2C1F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C1F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c1f_A] [2c1f]
  • SWISS-PROT database: [P29127]
  • Domain organization of [XYNA_NEOPA] by SWISSPFAM
    • Other resources with information on 2C1F
  • Community annotation for 2C1F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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