2C1L Hydrolase date Sep 15, 2005
title Structure Of The Bfii Restriction Endonuclease
authors S.Grazulis, E.Manakova, M.Roessle, M.Bochtler, G.Tamulaitiene, R.Huber, V.Siksnys
compound source
Molecule: Restriction Endonuclease
Chain: A, B
Synonym: Bfii Restriction Endonuclease
Ec: 3.1.21.4
Engineered: Yes
Organism_scientific: Bacillus Firmus
Organism_taxid: 1399
Strain: S8120
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Er2566
Expression_system_vector: Pet21b
Expression_system_plasmid: Pet21b-Bfiir6, 5
symmetry Space Group: I 4
R_factor 0.188 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.925 138.925 94.135 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.9 Å
ligand BCT, GOL, MES, SRT, TAR, TLA, TRS enzyme Hydrolase E.C.3.1.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • endonuclease activity


  • Primary referenceStructure of the metal-independent restriction enzyme BfiI reveals fusion of a specific DNA-binding domain with a nonspecific nuclease., Grazulis S, Manakova E, Roessle M, Bochtler M, Tamulaitiene G, Huber R, Siksnys V, Proc Natl Acad Sci U S A. 2005 Nov 1;102(44):15797-802. Epub 2005 Oct 24. PMID:16247004
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (2c1l.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 2C1L
  • CSU: Contacts of Structural Units for 2C1L
  • Likely Quarternary Molecular Structure file(s) for 2C1L
  • Structure Factors (1004 Kb)
  • Retrieve 2C1L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C1L from S2C, [Save to disk]
  • Re-refined 2c1l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C1L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c1l_B] [2c1l_A] [2c1l]
  • SWISS-PROT database: [Q9F4C9]
  • Domain organization of [Q9F4C9_BACFI] by SWISSPFAM
  • Other resources with information on 2C1L
  • Community annotation for 2C1L at PDBWiki (http://pdbwiki.org)
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