2C30 Transferase date Oct 02, 2005
title Crystal Structure Of The Human P21-Activated Kinase 6
authors P.Filippakopoulos, G.Berridge, J.Bray, N.Burgess, S.Colebrook, S. J.Eswaran, O.Gileadi, E.Papagrigoriou, P.Savitsky, C.Smee, A.Tur M.Sundstrom, C.Arrowsmith, J.Weigelt, A.Edwards, F.Von Delft, S.
compound source
Molecule: Serinethreonine-Protein Kinase Pak 6
Chain: A
Fragment: Kinase Domain, Residues 383-681
Synonym: P21-Activated Kinase 6, Pak-6, Pak-5
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.781 66.674 96.999 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CL, PO4, SEP enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structures of the p21-activated kinases PAK4, PAK5, and PAK6 reveal catalytic domain plasticity of active group II PAKs., Eswaran J, Lee WH, Debreczeni JE, Filippakopoulos P, Turnbull A, Fedorov O, Deacon SW, Peterson JR, Knapp S, Structure. 2007 Feb;15(2):201-13. PMID:17292838
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (2c30.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 2C30
  • CSU: Contacts of Structural Units for 2C30
  • Likely Quarternary Molecular Structure file(s) for 2C30
  • Structure Factors (369 Kb)
  • Retrieve 2C30 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C30 from S2C, [Save to disk]
  • Re-refined 2c30 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C30 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C30
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C30, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c30_A] [2c30]
  • SWISS-PROT database: [Q9NQU5]
  • Domain organization of [PAK6_HUMAN] by SWISSPFAM
  • Domain found in 2C30: [S_TKc ] by SMART
  • Other resources with information on 2C30
  • Community annotation for 2C30 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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