2C36	Viral Protein	date	Oct 04, 2005
title	Structure Of Unliganded Hsv Gd Reveals A Mechanism For Recep Mediated Activation Of Virus Entry
authors	C.Krummenacher, V.M.Supekar, J.C.Whitbeck, E.Lazear, S.A.Connoll R.J.Eisenberg, G.H.Cohen, D.C.Wiley, A.Carfi
compound		source
Molecule: Glycoprotein D Hsv-1 Chain: A, B Engineered: Yes Mutation: Yes Other_details: N-Acetyl-Glucosamine Linked To Asn121 And As Both Subunits (Chain A, B)		Organism_scientific: Human Herpesvirus 1 Organism_common: Herpes Simplex Virus (Hsv-1, Human) Organism_taxid: 10298 Strain: Patton Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Prsvnt
symmetry	Space Group: P 21 21 21	R_factor 0.194 R_Free 0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.252 106.193 130.315 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.11 Å
ligand	BMA, CL, MAN, NAG, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of unliganded HSV gD reveals a mechanism for receptor-mediated activation of virus entry., Krummenacher C, Supekar VM, Whitbeck JC, Lazear E, Connolly SA, Eisenberg RJ, Cohen GH, Wiley DC, Carfi A, EMBO J. 2005 Dec 7;24(23):4144-53. Epub 2005 Nov 17. PMID:16292345

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (2c36.pdb1.gz) 50 Kb Biological Unit Coordinates (2c36.pdb2.gz) 51 Kb LPC: Ligand-Protein Contacts for 2C36 CSU: Contacts of Structural Units for 2C36 Likely Quarternary Molecular Structure file(s) for 2C36 Structure Factors (418 Kb) Retrieve 2C36 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2C36 from S2C, [Save to disk] Re-refined 2c36 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2C36 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2C36

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2C36, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2c36_B] [2c36_A] [2c36] SWISS-PROT database: [P57083] Domain organization of [GD_HHV1P] by SWISSPFAM

Other resources with information on 2C36

Community annotation for 2C36 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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