2C3A Viral Protein date Oct 05, 2005
title Structure Of Unliganded Hsv Gd Reveals A Mechanism For Recep Mediated Activation Of Virus Entry
authors C.Krummenacher, V.M.Supekar, J.C.Whitbeck, E.Lazear, S.A.Connoll R.J.Eisenberg, G.H.Cohen, D.C.Wiley, A.Carfi
compound source
Molecule: Glycoprotein D
Chain: A, B
Engineered: Yes
Mutation: Yes
Other_details: N-Acetyl-D-Glucosamine Linked To Asn94 For B A And B
Organism_scientific: Human Herpesvirus 1
Organism_common: Human Herpes Simplex Virus 1
Organism_taxid: 10298
Strain: Patton
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pdl485
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.629 79.105 123.563 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CL, NA, NAG, ZN enzyme
note 2C3A is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of unliganded HSV gD reveals a mechanism for receptor-mediated activation of virus entry., Krummenacher C, Supekar VM, Whitbeck JC, Lazear E, Connolly SA, Eisenberg RJ, Cohen GH, Wiley DC, Carfi A, EMBO J. 2005 Dec 7;24(23):4144-53. Epub 2005 Nov 17. PMID:16292345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (2c3a.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (2c3a.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2C3A
  • CSU: Contacts of Structural Units for 2C3A
  • Likely Quarternary Molecular Structure file(s) for 2C3A
  • Structure Factors (239 Kb)
  • Retrieve 2C3A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C3A from S2C, [Save to disk]
  • Re-refined 2c3a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C3A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C3A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C3A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c3a] [2c3a_A] [2c3a_B]
  • SWISS-PROT database: [P57083]
  • Domain organization of [GD_HHV1P] by SWISSPFAM
  • Other resources with information on 2C3A
  • Community annotation for 2C3A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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