2C5Z Transcription date Nov 03, 2005
title Structure And Ctd Binding Of The Set2 Sri Domain
authors E.Vojnic, B.Simon, B.D.Strahl, M.Sattler, P.Cramer
compound source
Molecule: Set Domain Protein 2
Chain: A
Fragment: Set2 Rpb1 Interacting Domain, Residues 620-719
Engineered: Yes
Other_details: Residues 1-4 In The Construct Used For The S Determination Are From The Expression Vector.
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 9d
methodSolution NMR
note 2C5Z is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription., Vojnic E, Simon B, Strahl BD, Sattler M, Cramer P, J Biol Chem. 2006 Jan 6;281(1):13-5. Epub 2005 Nov 14. PMID:16286474
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (299 Kb) [Save to disk]
  • Biological Unit Coordinates (2c5z.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2C5Z
  • Original NMR restraints for 2C5Z from PDB
  • Retrieve 2C5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C5Z from S2C, [Save to disk]
  • View 2C5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C5Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C5Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c5z_A] [2c5z]
  • SWISS-PROT database: [P46995]
  • Domain organization of [SET2_YEAST] by SWISSPFAM
  • Other resources with information on 2C5Z
  • Community annotation for 2C5Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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